Presence of nucleosomes inPenicillium chrysogenum

We have studied the chromatin structure ofPenicillium chrysogenum. This fungus presents the typical nucleosomal repeat and the core DNA size characteristic of all the eukaryotes. The repeat length (about 180 base pairs) is in the range of those obtained for most fungi (160–180 base pairs) and shorter than in higher eukaryotes. Knowledge aboutP. chrysogenum chromatin structure opens the way to the study of the mechanisms of genetic regulation in this filamentous fungus.     

Successional dynamics of the phytoplankton in the lower part of the river Ebro

The temporal and spatial dynamics of phytoplankton have beenstudied in four sites located along the last 60 km of the riverEbro, over a period of 1 year. Diatoms and green algae werethe most abundant groups; blue-green algae were frequent onlyin autumn. Asterionella formosa dominated the winter phytoplanktonassemblages. In autumn, spring and early summer centric diatomswere dominant: Aulacoseira granulata (Ehr.) Simonsen in autunm;Cyclotella sp. p1., Skeletonema potamos (Weber) Hasle and StephanodisciLssp. p1. in spring. A great abundance of green algae was observedduring the summer, mainly in the lower sites. In the sites closerto the mouth, the spring maximum of centric diatoms extendedto the summer. Mainly in the downstream sites, a remarkablegrowth of Acrinocyclus normanii f. subsalsa (Juhl.-Daunf.) Hustedtand Stephanodiscus hantzschii f tenuis (Hust.) Hak. & Stoerm.was added to green algae in the late summer. As has been investigatedthrough a principal component analysis, the phytoplankton temporalsuccession and longitudinal differences between the sites maybe affected by the variations in flow and the increase of waterconductivity downstream; both factors seem to act together.The river is rather homogeneous with respect to the phytoplanktonassemblages during the winter and spring months, and from latespring to the following autumn, differences greatly increaseboth in time and downstream.     

Structural analysis and biochemical properties of laccase enzymes from two Pediococcus species

Prokaryotic laccases are emergent biocatalysts. However, they have not been broadly found and characterized in bacterial organisms, especially in lactic acid bacteria. Recently, a prokaryotic laccase from the lactic acid bacterium Pediococcus acidilactici 5930, which can degrade biogenic amines, was discovered. Thus, our study aimed to shed light on laccases from lactic acid bacteria focusing on two Pediococcus laccases, P. acidilactici 5930 and Pediococcus pentosaceus 4816, which have provided valuable information on their biochemical activities on redox mediators and biogenic amines. Both laccases are able to oxidize canonical substrates as ABTS, ferrocyanide and 2,6-DMP, and non-conventional substrates as biogenic amines. With ABTS as a substrate, they prefer an acidic environment and show sigmoidal kinetic activity, and are rather thermostable. Moreover, this study has provided the first structural view of two lactic acid bacteria laccases, revealing new structural features not seen before in other well-studied laccases, but which seem characteristic for this group of bacteria. We believe that understanding the role of laccases in lactic acid bacteria will have an impact on their biotechnological applications and provide a framework for the development of engineered lactic acid bacteria with enhanced properties.     

Bladder Cancer After Radiotherapy for Prostate Cancer

External beam radiotherapy (EBRT) is frequently used in the management of prostate cancer (PCa) as definitive, postoperative, or salvage local treatment. Although EBRT plays a central role in the management of PCa, complications remain a troubling by-product. Several studies have demonstrated an association between radiotherapy and elevated risk of acute and late toxicities. A secondary malignancy induced by initial therapy represents one of the most serious complications related to definitive cancer treatment. The radiation-related secondary primary malignancy risk increases with increasing survival time. Transitional cell carcinoma of the bladder is the most frequent secondary primary malignancy occurring after radiotherapy and is described as more aggressive; it may be diagnosed later because some radiation oncologists believe that the hematuria that occurs after prostate EBRT is normal. Some patients treated for localized PCa will subsequently develop invasive bladder cancer requiring surgical intervention. Patients with PCa treated with EBRT should be monitored closely for the presence of bladder cancer.Key words: Bladder cancer, Prostate cancer, Radiotherapy, External beam radiotherapyThe phenomenon of radiation-inducing the carcinogenesis has been well described in literature for decades. The correlation between ionizing radiation and DNA damage has been discussed in several studies.^1–4 Most of these studies evaluated the growth of solid tumors in a large population exposed to moderate to heavy doses of radiation, such as factory workers, patients exposed to a large number of diagnostic radiographic studies, and survivors of atomic and nuclear explosions. ¹ The casual effects of radiation exposure with subsequent mutagenesis are quite clear, shown both in vivo and in vitro.² Previous radiotherapy (RT) for prostate cancer (PCa) may play an important role in the development of secondary primary bladder cancer. This is a fairly uncommon event but a very real entity, of which both urologists and radiation oncologists need to be aware.     

Residues 240–250 in the C-Terminus of the Pirh2 Protein Complement the Function of the RING Domain in Self-Ubiquitination of the Pirh2 Protein

Pirh2 is a p53 inducible gene that encodes a RING-H2 domain and is proposed to be a main regulator of p53 protein, thus fine tuning the DNA damage response. Pirh2 interacts physically with p53 and promotes its MDM2-independent ubiquitination and subsequent degradation as well as participates in an auto-regulatory feedback loop that controls p53 function. Pirh2 also self-ubiquitinates. Interestingly, Pirh2 is overexpressed in a wide range of human tumors. In this study, we investigated the domains and residues essential for Pirh2 self-ubiquitination. Deletions were made in each of the three major domains of Pirh2: the N-terminal domain (NTD), Ring domain (RING), and C-terminal domain (CTD). The effects of these deletions on Pirh2 self-ubiquitination were then assessed using in vitro ubiquitination assays. Our results demonstrate that the RING domain is essential, but not sufficient, for Pirh2 self-ubiquitination and that residues 240–250 of the C-terminal domain are also essential. Our results demonstrate that Pirh2 mediated p53 polyubiquitination occurs mainly through the K48 residue of ubiquitin in vitro. Our data further our understanding of the mechanism of Pirh2 self-ubiquitination and may help identify valuable therapeutic targets that play roles in reducing the effects of the overexpression of Pirh2, thus maximizing p53''s response to DNA damage.     

The Impact of Global Change Factors on Redox Signaling Underpinning Stress Tolerance

The plant cuticle is an extracellular hydrophobic layer that covers the aerial epidermis of all land plants, providing protection against desiccation and external environmental stresses. The past decade has seen considerable progress in assembling models for the biosynthesis of its two major components, the polymer cutin and cuticular waxes. Most recently, two breakthroughs in the long-sought molecular bases of alkane formation and polyester synthesis have allowed construction of nearly complete biosynthetic pathways for both waxes and cutin. Concurrently, a complex regulatory network controlling the synthesis of the cuticle is emerging. It has also become clear that the physiological role of the cuticle extends well beyond its primary function as a transpiration barrier, playing important roles in processes ranging from development to interaction with microbes. Here, we review recent progress in the biochemistry and molecular biology of cuticle synthesis and function and highlight some of the major questions that will drive future research in this field.The first plant colonizers of land, approximately 450 million years ago in the mid-Paleozoic era, faced a daunting set of challenges associated with their new terrestrial environment, including desiccation, temperature extremes, gravity, and increased exposure to UV radiation (Waters, 2003; Leliaert et al., 2011). The transition from an exclusively aquatic to a terrestrial life style, therefore, would have necessitated the evolution of a toolbox of morphological and physiological features, some of which are apparent through studies of the fossil record or by examining extant plant lineages. For example, the development of architecturally complex cell walls for biomechanical support and structural protection, which typify modern land plants, can be traced back to divergence and radiation within the Charophycean green algae, their immediate ancestors (Sørensen et al., 2011). However, the most critical adaptive trait for survival during terrestrialization would have been the ability to retain water in increasingly dehydrating habitats. Consequently, the capacity to synthesize, deposit, and maintain a hydrophobic surface layer, or cuticle, over the surfaces of aerial organs was arguably one of the most important innovations in the history of plant evolution. This idea is borne out by both fossil evidence (Edwards, 1993) and the ubiquity of cuticles among all extant embryophytes, from bryophytes (Budke et al., 2012) to angiosperms.Armed with a protective skin, together with a range of adaptive strategies for acquiring and conserving water, as well as for avoiding or tolerating water stress, embryophytes now thrive in a wide range of desiccating environments (Ogburn and Edwards, 2010; Aroca et al., 2012; Delaux et al., 2012; Jones and Dolan, 2012; Obata and Fernie, 2012; Gaff and Oliver, 2013). Accordingly, cuticles from a broad range of species, and in various ecological and agricultural contexts, have been studied from the perspective of their role as the primary barrier to transpirational water loss. However, it is now clear that cuticles play numerous other roles in plant development, physiology, and interactions with the abiotic environment and other organisms. Indeed, in recent years, there have been many instances of unexpected associations between the cuticle and diverse aspects of plant biology. In parallel, the past decade has seen considerable progress in understanding the biosynthesis of the major cuticle components and the complex regulatory networks that control cuticle synthesis and assembly.This review summarizes recent progress in elucidating the biochemistry and molecular biology of cuticle synthesis and function and highlights some of the connections to other aspects of plant biology, including signaling, pathogen defense, and development. Given the broad scope and space limitation, not every aspect of cuticle biosynthesis is covered in depth, and recent specialized reviews focusing on cuticle biomechanical properties (Domínguez et al., 2011), defensive functions (Reina-Pinto and Yephremov, 2009), and transport barrier properties (Burghardt and Riederer, 2006) may be of further interest. In addition, key ongoing questions in the field are discussed, and potential future approaches to resolving those questions are suggested.     

A new exotic bird in Europe: recent spread and potential range of Red‐billed Leiothrix Leiothrix lutea in Catalonia (northeast Iberian Peninsula)

Capsule Following recent introduction in Spain, Red‐billed Leiothrix have the potential to attain a wide distribution in Catalonia and probably in other parts of Europe.

Aim To investigate past, present and potential distribution of this exotic species in Catalonia (northeast Iberian Peninsula).

Methods We collected data on the species’ occurrence over the period 1992–2008 and used information obtained in other regions where it has previously established to produce hypotheses about the ecological processes that affect its population increase and range expansion. We then generated fine‐grained distribution maps covering the entire region for the periods 1992–2001 and 2002–2008, and for the species’ potential range according to its specific habitat requirements.

Results Since being first detected in the wild in the Collserola Park, near the city of Barcelona, Red‐billed Leiothrix have expanded to neighbouring forested areas. The wild population is currently in a phase of exponential growth and, according to our habitat suitability model, the species’ potential distribution in Catalonia might be 36 times greater than at present.

Conclusion Our results suggest that the Red‐billed Leiothrix has the potential to attain a widespread distribution over large regions of Europe in the near future. However, we discuss several factors that might affect these predictions.     

Microbial biofilm structure and organic matter use in mediterranean streams

River and stream biofilms in mediterranean fluvial ecosystems face both extreme seasonality as well as arrhythmic fluctuations. The hydrological extremes (droughts and floods) impose direct changes in water availability but also in the quantity and quality of organic matter and nutrients that sustain the microbial growth. This review analyzes how these ecological pulses might determine unique properties of biofilms developing in mediterranean streams. The paper brings together data from heterotrophic and autotrophic community structure, and extracellular enzyme activities in biofilms in mediterranean streams. Mediterranean stream biofilms show higher use of peptides during the favorable period for epilithic algae development (spring), and preferential use of cellulose and hemicellulose in autumn as a response to allochthonous input. The drying process causes the reduction in bacterial production and chlorophyll biomass, but the rapid recovery of both autotrophs and heterotrophs with rewetting indicates their adaptability to fluctuations. Bacteria surviving the drought are mainly associated with sediment and leaf litter which serve as “humid refuges”. Some algae and cyanobacteria show resistant strategies to cope with the drought stress. The resistance to these fluctuations is strongly linked to the streambed characteristics (e.g., sediment grain size, organic matter accumulation, nutrient content).